Description
nucleoporin 54kDa
Location
Chromosome 4: 76,114,659-76,148,515 reverse strand.
VEGA68:CM000666.2
About this gene
This gene has 18 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| NUP54-001 | OTTHUMT00000252402.3 | 2367 | 507aa | OTTHUMP00000160589 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS3576 | Q7Z3B4 | |
| NUP54-004 | OTTHUMT00000362699.1 | 1563 | 459aa | OTTHUMP00000219174 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS63998 | - | |
| NUP54-009 | OTTHUMT00000362805.2 | 500 | 158aa | OTTHUMP00000219211 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| NUP54-002 | OTTHUMT00000362697.1 | 1938 | 102aa | OTTHUMP00000219172 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| NUP54-003 | OTTHUMT00000362698.1 | 1604 | 138aa | OTTHUMP00000219173 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| NUP54-005 | OTTHUMT00000362700.1 | 1385 | 102aa | OTTHUMP00000219175 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| NUP54-010 | OTTHUMT00000362806.1 | 579 | 84aa | OTTHUMP00000219212 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| NUP54-008 | OTTHUMT00000362804.1 | 849 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP54-017 | OTTHUMT00000362813.1 | 744 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP54-011 | OTTHUMT00000362807.1 | 566 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP54-013 | OTTHUMT00000362809.1 | 548 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP54-007 | OTTHUMT00000362803.1 | 521 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP54-014 | OTTHUMT00000362810.1 | 494 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP54-012 | OTTHUMT00000362808.1 | 441 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| NUP54-006 | OTTHUMT00000362701.1 | 1671 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NUP54-015 | OTTHUMT00000362811.1 | 537 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NUP54-018 | OTTHUMT00000362814.1 | 531 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| NUP54-016 | OTTHUMT00000362812.1 | 314 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
