Description
spastic paraplegia 11 (autosomal recessive)
Synonyms
FLJ21439
Location
Chromosome 15: 44,562,696-44,663,678 reverse strand.
VEGA68:CM000677.2
About this gene
This gene has 26 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SPG11-001 | OTTHUMT00000253927.1 | 7774 | 2443aa | OTTHUMP00000161846 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS10112 | Q96JI7 | |
| SPG11-002 | OTTHUMT00000415729.1 | 7288 | 2330aa | OTTHUMP00000247091 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS53939 | - | |
| SPG11-004 | OTTHUMT00000415730.1 | 6935 | 2265aa | OTTHUMP00000247092 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C4B7M2 | |
| SPG11-006 | OTTHUMT00000415731.2 | 6426 | 2079aa | OTTHUMP00000247093 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| SPG11-003 | OTTHUMT00000415732.1 | 2579 | 779aa | OTTHUMP00000247094 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0YN34 | |
| SPG11-007 | OTTHUMT00000415798.1 | 2127 | 567aa | OTTHUMP00000247124 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG11-019 | OTTHUMT00000415800.2 | 750 | 250aa | OTTHUMP00000247125 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| SPG11-023 | OTTHUMT00000415814.1 | 620 | 138aa | OTTHUMP00000247130 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG11-010 | OTTHUMT00000415815.1 | 411 | 107aa | OTTHUMP00000247131 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG11-005 | OTTHUMT00000415733.1 | 2808 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SPG11-021 | OTTHUMT00000415818.2 | 468 | 156aa | OTTHUMP00000247133 | Non stop decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG11-013 | OTTHUMT00000415809.1 | 571 | 102aa | OTTHUMP00000247128 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG11-016 | OTTHUMT00000415805.1 | 561 | 131aa | OTTHUMP00000247126 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG11-025 | OTTHUMT00000415808.1 | 447 | 99aa | OTTHUMP00000247127 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG11-022 | OTTHUMT00000415816.1 | 413 | 43aa | OTTHUMP00000247132 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPG11-014 | OTTHUMT00000415807.1 | 879 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SPG11-015 | OTTHUMT00000415806.1 | 858 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SPG11-027 | OTTHUMT00000415801.1 | 716 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SPG11-008 | OTTHUMT00000415817.1 | 1816 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG11-026 | OTTHUMT00000415804.1 | 759 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG11-012 | OTTHUMT00000415811.1 | 629 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG11-024 | OTTHUMT00000415812.1 | 555 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG11-018 | OTTHUMT00000415802.1 | 530 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG11-011 | OTTHUMT00000415813.1 | 526 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG11-017 | OTTHUMT00000415803.1 | 518 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPG11-020 | OTTHUMT00000415799.1 | 437 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
