Description
leucine-rich repeats and calponin homology (CH) domain containing 3
Synonyms
MGC4126
Location
Chromosome 3: 197,791,226-197,888,436 forward strand.
VEGA68:CM000665.2
About this gene
This gene has 23 transcripts (splice variants), 5 orthologues and 3 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| LRCH3-004 | OTTHUMT00000339963.1 | 2258 | 712aa | OTTHUMP00000207961 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS3330 | - | |
| LRCH3-001 | OTTHUMT00000339960.1 | 7394 | 803aa | OTTHUMP00000207958 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| LRCH3-009 | OTTHUMT00000339968.1 | 3205 | 181aa | OTTHUMP00000207963 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C0F9 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| LRCH3-006 | OTTHUMT00000339965.1 | 2970 | 777aa | OTTHUMP00000207962 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | Q96II8 | |
| LRCH3-003 | OTTHUMT00000339962.1 | 2299 | 725aa | OTTHUMP00000207960 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| LRCH3-002 | OTTHUMT00000339961.1 | 2034 | 623aa | OTTHUMP00000207959 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | E9PD99 | |
| LRCH3-017 | OTTHUMT00000339976.1 | 977 | 214aa | OTTHUMP00000207966 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C1G3 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| LRCH3-015 | OTTHUMT00000339974.2 | 681 | 227aa | OTTHUMP00000207965 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7C0J8 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| LRCH3-010 | OTTHUMT00000339969.1 | 5043 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| LRCH3-005 | OTTHUMT00000339964.1 | 2235 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| LRCH3-008 | OTTHUMT00000339967.1 | 1631 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| LRCH3-007 | OTTHUMT00000339966.1 | 1432 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| LRCH3-011 | OTTHUMT00000339970.1 | 611 | 92aa | OTTHUMP00000207964 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| LRCH3-012 | OTTHUMT00000339971.1 | 733 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| LRCH3-013 | OTTHUMT00000339972.1 | 783 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| LRCH3-021 | OTTHUMT00000339980.1 | 683 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| LRCH3-023 | OTTHUMT00000339982.1 | 662 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| LRCH3-018 | OTTHUMT00000339977.1 | 586 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| LRCH3-019 | OTTHUMT00000339978.1 | 562 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| LRCH3-014 | OTTHUMT00000339973.1 | 537 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| LRCH3-016 | OTTHUMT00000339975.1 | 536 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| LRCH3-020 | OTTHUMT00000339979.1 | 520 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| LRCH3-022 | OTTHUMT00000339981.1 | 227 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
