Description
SH3 domain and tetratricopeptide repeats 1
Synonyms
FLJ20356
Location
Chromosome 4: 8,182,072-8,241,803 forward strand.
VEGA68:CM000666.2
About this gene
This gene has 26 transcripts (splice variants).
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SH3TC1-001 | OTTHUMT00000206991.3 | 4226 | 1336aa | OTTHUMP00000115586 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS3399 | Q8TE82 | |
| SH3TC1-004 | OTTHUMT00000358997.2 | 829 | 113aa | OTTHUMP00000222261 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| SH3TC1-005 | OTTHUMT00000358998.3 | 617 | 94aa | OTTHUMP00000219313 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SH3TC1-030 | OTTHUMT00000360203.3 | 551 | 183aa | OTTHUMP00000218015 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| SH3TC1-007 | OTTHUMT00000360221.2 | 514 | 41aa | OTTHUMP00000273450 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SH3TC1-011 | OTTHUMT00000358972.2 | 509 | 105aa | OTTHUMP00000217934 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SH3TC1-006 | OTTHUMT00000360183.2 | 377 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SH3TC1-003 | OTTHUMT00000358996.1 | 4293 | 76aa | OTTHUMP00000217994 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SH3TC1-002 | OTTHUMT00000358995.1 | 3484 | 202aa | OTTHUMP00000217401 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SH3TC1-017 | OTTHUMT00000359008.2 | 1124 | 101aa | OTTHUMP00000222262 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SH3TC1-032 | OTTHUMT00000363001.2 | 558 | 25aa | OTTHUMP00000219312 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SH3TC1-029 | OTTHUMT00000360204.2 | 565 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SH3TC1-013 | OTTHUMT00000360200.1 | 560 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SH3TC1-012 | OTTHUMT00000358971.1 | 543 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SH3TC1-021 | OTTHUMT00000360045.1 | 538 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SH3TC1-019 | OTTHUMT00000360043.1 | 259 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SH3TC1-015 | OTTHUMT00000359006.3 | 5829 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SH3TC1-008 | OTTHUMT00000359001.1 | 3798 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SH3TC1-009 | OTTHUMT00000359002.1 | 2258 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SH3TC1-010 | OTTHUMT00000359003.1 | 1410 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SH3TC1-023 | OTTHUMT00000360201.1 | 755 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SH3TC1-014 | OTTHUMT00000359005.1 | 698 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SH3TC1-026 | OTTHUMT00000360206.2 | 627 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SH3TC1-016 | OTTHUMT00000359007.1 | 600 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SH3TC1-022 | OTTHUMT00000362999.1 | 554 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SH3TC1-027 | OTTHUMT00000360205.2 | 515 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
