Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
Synonyms
APR-5, DP97, MGC2835
Location
Chromosome 12: 113,157,174-113,185,479 reverse strand.
VEGA68:CM000674.2
About this gene
This gene has 11 transcripts (splice variants), 20 orthologues and 19 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| DDX54-001 | OTTHUMT00000405374.2 | 4380 | 882aa | OTTHUMP00000241842 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS44984 | - | |
| DDX54-002 | OTTHUMT00000405435.1 | 4377 | 881aa | OTTHUMP00000241869 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS31907 | Q8TDD1 | |
| DDX54-010 | OTTHUMT00000405443.1 | 780 | 208aa | OTTHUMP00000241872 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F8VRX4 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| DDX54-011 | OTTHUMT00000405439.2 | 479 | 160aa | OTTHUMP00000241870 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0YHH7 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| DDX54-003 | OTTHUMT00000405436.1 | 1264 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| DDX54-009 | OTTHUMT00000405442.1 | 872 | 82aa | OTTHUMP00000241871 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| DDX54-005 | OTTHUMT00000405437.1 | 756 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| DDX54-007 | OTTHUMT00000405440.1 | 594 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| DDX54-006 | OTTHUMT00000405438.1 | 458 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| DDX54-004 | OTTHUMT00000405441.1 | 498 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| DDX54-008 | OTTHUMT00000405444.1 | 420 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
