Description
tRNA splicing endonuclease 54 homolog (S. cerevisiae)
Synonyms
SEN54L, SEN54
Location
Chromosome 17: 75,515,707-75,524,739 forward strand.
VEGA68:CM000679.2
About this gene
This gene has 14 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| TSEN54-001 | OTTHUMT00000447618.1 | 1944 | 526aa | OTTHUMP00000262106 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS11724 | Q7Z6J9 | |
| TSEN54-012 | OTTHUMT00000447627.1 | 1139 | 259aa | OTTHUMP00000262110 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| TSEN54-005 | OTTHUMT00000447617.2 | 627 | 72aa | OTTHUMP00000262105 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| TSEN54-003 | OTTHUMT00000447622.1 | 1864 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| TSEN54-002 | OTTHUMT00000447621.1 | 1738 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| TSEN54-004 | OTTHUMT00000447616.1 | 1682 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| TSEN54-008 | OTTHUMT00000447625.1 | 994 | 167aa | OTTHUMP00000262109 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| TSEN54-007 | OTTHUMT00000447623.1 | 798 | 178aa | OTTHUMP00000262107 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| TSEN54-011 | OTTHUMT00000447624.1 | 765 | 142aa | OTTHUMP00000262108 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| TSEN54-010 | OTTHUMT00000447620.1 | 568 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| TSEN54-013 | OTTHUMT00000447628.1 | 786 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| TSEN54-006 | OTTHUMT00000447619.1 | 733 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| TSEN54-014 | OTTHUMT00000447629.1 | 650 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| TSEN54-009 | OTTHUMT00000447626.1 | 282 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
