Transcript: GPCPD1-004 OTTHUMT00000077872.2

Description

glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)

Location

Chromosome 20: 5,544,439-5,575,508 reverse strand.

About this transcript

This transcript has 7 exons and is annotated with 7 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000031806 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
GPCPD1-001	OTTHUMT00000077869.2	5489	672aa	OTTHUMP00000030200	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS13090	Q9NPB8
GPCPD1-004	OTTHUMT00000077872.2	4015	264aa	OTTHUMP00000030202	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H0Y565	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
GPCPD1-003	OTTHUMT00000077871.2	819	101aa	OTTHUMP00000281069	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	A0A0J9YY12
GPCPD1-007	OTTHUMT00000487898.1	571	62aa	OTTHUMP00000281068	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	A0A0J9YVP8	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
GPCPD1-006	OTTHUMT00000077874.1	633	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
GPCPD1-002	OTTHUMT00000077870.2	6649	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
GPCPD1-005	OTTHUMT00000077873.1	342	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 7 Transcript length: 4,015 bps Translation length: 264 residues

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 03/02/2015 (Created on 12/03/2003)

Alternative symbols

RP5-1022P6.2-004

Remarks

novel protein

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 5,544,439-5,575,508 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000418646

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: GPCPD1-004 OTTHUMT00000077872.2

Summary

Transcript-based displays