Transcript: SOGA1-001 OTTHUMT00000079040.6

Description

suppressor of glucose, autophagy associated 1

Location

About this transcript

This transcript has 12 exons and is annotated with 19 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SOGA1-005	OTTHUMT00000276635.1	14371	1661aa	OTTHUMP00000178800	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS54459	-
SOGA1-003	OTTHUMT00000276634.3	3703	1016aa	OTTHUMP00000274111	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS46598	X6R3R3
SOGA1-001	OTTHUMT00000079040.6	4478	1275aa	OTTHUMP00000030870	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	H0YDM2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SOGA1-004	OTTHUMT00000079057.2	802	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 12 Transcript length: 4,478 bps Translation length: 1,275 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 6, last modified on 28/02/2014 (Created on 02/04/2002)

Alternative symbols

RP3-469A13.2-001

Remarks

alternative 3' UTR

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 36,783,782-36,816,281 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000465671

Curation Method

Manual annotation from Havana