Transcript: SNRNP25-004 OTTHUMT00000134189.4

Description

small nuclear ribonucleoprotein 25kDa (U11/U12)

Location

Chromosome 16: 53,887-57,372 forward strand.

About this transcript

This transcript has 6 exons and is annotated with 3 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000060720 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SNRNP25-001	OTTHUMT00000134186.3	1905	123aa	OTTHUMP00000067143	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	Q4TT61
SNRNP25-006	OTTHUMT00000318417.3	408	96aa	OTTHUMP00000197536	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SNRNP25-003	OTTHUMT00000134188.1	769	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
SNRNP25-004	OTTHUMT00000134189.4	831	92aa	OTTHUMP00000197537	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
SNRNP25-007	OTTHUMT00000318418.3	329	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SNRNP25-005	OTTHUMT00000134190.1	1260	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SNRNP25-002	OTTHUMT00000134187.2	1130	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 6 Transcript length: 831 bps Translation length: 92 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 4, last modified on 28/02/2014 (Created on 12/01/2005)

Alternative symbols

Z69719.2-004

Other assemblies

This transcript maps to 53,887-57,372 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000397876

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SNRNP25-004 OTTHUMT00000134189.4

Summary

Transcript-based displays