Transcript: GIN1-006 OTTHUMT00000370483.1

Description

gypsy retrotransposon integrase 1

Location

About this transcript

This transcript has 4 exons and is annotated with 2 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
GIN1-001	OTTHUMT00000370478.3	3229	522aa	OTTHUMP00000222701	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS43349	Q9NXP7
GIN1-003	OTTHUMT00000370480.1	1040	222aa	OTTHUMP00000222703	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
GIN1-002	OTTHUMT00000370479.1	3325	80aa	OTTHUMP00000222702	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
GIN1-006	OTTHUMT00000370483.1	525	80aa	OTTHUMP00000222704	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
GIN1-005	OTTHUMT00000370482.1	549	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
GIN1-007	OTTHUMT00000370484.1	462	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
GIN1-004	OTTHUMT00000370481.1	567	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 4 Transcript length: 525 bps Translation length: 80 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 19/11/2009)

Alternative symbols

CTC-340K5.1-006

Other assemblies

This transcript maps to 103,088,126-103,120,089 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000513747

Curation Method

Manual annotation from Havana