Transcript: ARHGEF40-002 OTTHUMT00000413124.1

Description

Rho guanine nucleotide exchange factor (GEF) 40

Location

Chromosome 14: 21,070,291-21,089,555 forward strand.

About this transcript

This transcript has 23 exons and is annotated with 6 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000171359 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
ARHGEF40-001	OTTHUMT00000413122.1	5919	1519aa	OTTHUMP00000245893	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS32041	Q8TER5
ARHGEF40-004	OTTHUMT00000413123.2	1796	557aa	OTTHUMP00000245894	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
ARHGEF40-003	OTTHUMT00000413125.1	5204	620aa	OTTHUMP00000245896	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
ARHGEF40-002	OTTHUMT00000413124.1	4902	502aa	OTTHUMP00000245895	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
ARHGEF40-005	OTTHUMT00000413126.1	3902	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
ARHGEF40-006	OTTHUMT00000413129.1	2928	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
ARHGEF40-008	OTTHUMT00000413128.1	935	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
ARHGEF40-009	OTTHUMT00000413130.1	794	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 23 Transcript length: 4,902 bps Translation length: 502 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 13/04/2011)

Alternative symbols

RP11-998D10.6-002

Other assemblies

This transcript maps to 21,070,291-21,089,555 in GRCh38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000556399

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: ARHGEF40-002 OTTHUMT00000413124.1

Summary

Transcript-based displays