Transcript: VSX1-006 OTTHUMT00000334160.1

Description

visual system homeobox 1

Location

About this transcript

This transcript has 5 exons and is annotated with 11 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
VSX1-001	OTTHUMT00000078384.4	2192	365aa	OTTHUMP00000030468	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS13168	Q9NZR4
VSX1-003	OTTHUMT00000334157.2	1977	301aa	OTTHUMP00000205188	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS58767	-
VSX1-004	OTTHUMT00000334158.2	1197	236aa	OTTHUMP00000205189	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS58766	-
VSX1-002	OTTHUMT00000078385.4	943	239aa	OTTHUMP00000205192	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS13169	-
VSX1-005	OTTHUMT00000334159.2	1486	280aa	OTTHUMP00000205190	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
VSX1-006	OTTHUMT00000334160.1	1305	218aa	OTTHUMP00000205191	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
VSX1-007	OTTHUMT00000412130.1	558	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 1,305 bps Translation length: 218 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 14/08/2008)

Alternative symbols

RP5-1025A1.1-006

Other assemblies

This transcript maps to 25,071,484-25,082,131 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000409958

Curation Method

Manual annotation from Havana