Transcript: TAF4-004 OTTHUMT00000079971.3

Description

TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa

Location

Chromosome 20: 62,000,568-62,007,561 reverse strand.

About this transcript

This transcript has 5 exons and is annotated with 8 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000032893 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
TAF4-001	OTTHUMT00000079968.2	4628	1085aa	OTTHUMP00000031446	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS33500	O00268
TAF4-004	OTTHUMT00000079971.3	645	215aa	OTTHUMP00000274346	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	V9GY14	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
TAF4-006	OTTHUMT00000079973.2	532	79aa	OTTHUMP00000274347	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	V9GY03	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
TAF4-002	OTTHUMT00000079969.2	4222	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
TAF4-011	OTTHUMT00000472625.1	562	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
TAF4-010	OTTHUMT00000472623.2	284	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
TAF4-008	OTTHUMT00000472618.1	2487	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
TAF4-009	OTTHUMT00000472622.1	2440	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
TAF4-007	OTTHUMT00000472617.1	2147	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
TAF4-003	OTTHUMT00000079970.1	412	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 645 bps Translation length: 215 residues

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 09/07/2015 (Created on 19/11/2003)

Alternative symbols

RP5-1107C24.1-004

Annotation Attributes

not organism-supported [Definitions]

Remarks

TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135 kDa (TAF2C, TAF4A, TAF2C1, TAFII130, TAFII135)

CDS start not found

CDS end not found

mRNA start not found

mRNA end not found

Other assemblies

This transcript maps to 62,000,568-62,007,561 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000488539

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: TAF4-004 OTTHUMT00000079971.3

Summary

Transcript-based displays