Transcript: OTX1-005 OTTHUMT00000411625.1

Description

orthodenticle homeobox 1

Location

About this transcript

This transcript has 5 exons and is annotated with 3 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
OTX1-001	OTTHUMT00000251617.1	2861	354aa	OTTHUMP00000159827	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS1873	P32242
OTX1-002	OTTHUMT00000326731.1	2861	354aa	OTTHUMP00000201938	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS1873	P32242
OTX1-005	OTTHUMT00000411625.1	1694	101aa	OTTHUMP00000245069	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
OTX1-003	OTTHUMT00000326732.2	1244	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
OTX1-004	OTTHUMT00000326733.1	624	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
OTX1-006	OTTHUMT00000326735.1	564	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 1,694 bps Translation length: 101 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 27/02/2014 (Created on 23/03/2011)

Alternative symbols

AC009501.3-005

Other assemblies

This transcript maps to 63,050,831-63,056,583 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000405984

Curation Method

Manual annotation from Havana