This is an archived version of Vega. Click here for more information.

Mouse

Loading…

Help & Documentation

Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
- Genomic alignments
- Orthologues
- Alt. alleles
Ontologies
Gene expression
External references
Supporting evidence
Other genome browsers
- Ensembl

Configure this page

Share this page

Bookmark this page

.

Gene: Cd40 OTTMUSG00000016424

.

Description

CD40 antigen

Location

Chromosome 2: 165,055,627-165,072,948 forward strand.

About this gene

This gene has 6 transcripts (splice variants), 3 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Cd40-001	OTTMUST00000039545.1	2986	289aa	OTTMUSP00000017667	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS17069	P27512
Cd40-005	OTTMUST00000039753.1	668	203aa	OTTMUSP00000017739	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS17071	-
Cd40-003	OTTMUST00000039751.2	391	121aa	OTTMUSP00000017738	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A2A5L7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Cd40-002	OTTMUST00000039546.3	1062	234aa	OTTMUSP00000065403	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
Cd40-004	OTTMUST00000039752.2	348	44aa	OTTMUSP00000065402	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	S4R2M8
Cd40-006	OTTMUST00000039754.1	545	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

.

Summary

.

.

Gene-based displays