Description
ribosomal protein L13a
Location
Chromosome 7: 45,125,558-45,128,761 reverse strand.
About this gene
This gene has 21 transcripts (splice variants), 3 orthologues and 2 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| Rpl13a-001 | OTTMUST00000039830.3 | 1047 | 203aa | OTTMUSP00000017768 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS21230 | P19253 | |
| Rpl13a-025 | OTTMUST00000147147.1 | 552 | 177aa | OTTMUSP00000076584 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GTA1 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Rpl13a-018 | OTTMUST00000145378.1 | 503 | 167aa | OTTMUSP00000075748 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GSQ6 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| Rpl13a-012 | OTTMUST00000144230.2 | 495 | 131aa | OTTMUSP00000076585 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GSF0 | |
| Rpl13a-024 | OTTMUST00000147145.1 | 493 | 70aa | OTTMUSP00000076582 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GQW6 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Rpl13a-026 | OTTMUST00000147146.1 | 449 | 133aa | OTTMUSP00000076583 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GT00 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Rpl13a-022 | OTTMUST00000146821.1 | 389 | 122aa | OTTMUSP00000076376 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GSC2 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| Rpl13a-003 | OTTMUST00000039832.2 | 1175 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| Rpl13a-019 | OTTMUST00000145375.1 | 933 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| Rpl13a-017 | OTTMUST00000145376.1 | 690 | 110aa | OTTMUSP00000075747 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A1B0GSL5 | |
| Rpl13a-009 | OTTMUST00000039839.4 | 658 | 148aa | OTTMUSP00000065180 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A1B0GSB2 | |
| Rpl13a-013 | OTTMUST00000144232.1 | 562 | 128aa | OTTMUSP00000075213 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A1B0GRH1 | |
| Rpl13a-014 | OTTMUST00000144231.1 | 514 | 110aa | OTTMUSP00000075212 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A1B0GSJ2 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Rpl13a-006 | OTTMUST00000039835.2 | 734 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Rpl13a-020 | OTTMUST00000145379.1 | 399 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Rpl13a-004 | OTTMUST00000039833.1 | 176 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Rpl13a-007 | OTTMUST00000039836.4 | 992 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Rpl13a-016 | OTTMUST00000144233.1 | 514 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Rpl13a-005 | OTTMUST00000039834.2 | 503 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Rpl13a-021 | OTTMUST00000145377.1 | 470 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Rpl13a-008 | OTTMUST00000039838.1 | 464 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
