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Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
- Genomic alignments (1)
- Orthologues (13)
- Alt. alleles
Ontologies
Gene expression
External references
Supporting evidence
Other genome browsers
- Ensembl

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Gene: Smarcal1 OTTMUSG00000021499

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Description

Swi/SNF related matrix associated actin dependent regulator of chromatin subfamily a-like 1

Location

Chromosome 1: 72,583,251-72,633,134 forward strand.

About this gene

This gene has 9 transcripts (splice variants), 13 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Smarcal1-001	OTTMUST00000050950.2	3059	910aa	OTTMUSP00000023911	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS35609	Q8BJL0
Smarcal1-006	OTTMUST00000050955.3	2994	910aa	OTTMUSP00000062986	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS35609	Q8BJL0
Smarcal1-008	OTTMUST00000050957.2	828	194aa	OTTMUSP00000023914	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Smarcal1-007	OTTMUST00000050956.2	579	98aa	OTTMUSP00000023913	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Smarcal1-004	OTTMUST00000050953.2	4003	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Smarcal1-005	OTTMUST00000050954.2	2818	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Smarcal1-003	OTTMUST00000050952.2	2237	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Smarcal1-002	OTTMUST00000050951.2	1754	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Smarcal1-010	OTTMUST00000050959.2	542	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

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Summary

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