Description
LIM and calponin homology domains 1
Location
Chromosome 5: 66,745,827-67,057,158 forward strand.
About this gene
This gene has 19 transcripts (splice variants), 2 orthologues and 1 paralogue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| Limch1-001 | OTTMUST00000069449.4 | 5903 | 901aa | OTTMUSP00000035270 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS57347 | - | |
| Limch1-004 | OTTMUST00000069459.5 | 5192 | 1057aa | OTTMUSP00000035276 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS39102 | Q3UH68 | |
| Limch1-013 | OTTMUST00000069543.4 | 5050 | 1068aa | OTTMUSP00000035341 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D3YU22 | |
| Limch1-019 | OTTMUST00000138048.1 | 4185 | 774aa | OTTMUSP00000072635 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D3YU59 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Limch1-016 | OTTMUST00000138046.1 | 3157 | 898aa | OTTMUSP00000072634 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D3Z589 | |
| Limch1-008 | OTTMUST00000069515.5 | 876 | 268aa | OTTMUSP00000035317 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| Limch1-007 | OTTMUST00000069514.2 | 852 | 237aa | OTTMUSP00000035316 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| Limch1-006 | OTTMUST00000069513.3 | 520 | 29aa | OTTMUSP00000072633 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| Limch1-003 | OTTMUST00000069458.2 | 4371 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| Limch1-012 | OTTMUST00000069542.1 | 435 | 60aa | OTTMUSP00000035340 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | F6W1Y9 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| Limch1-005 | OTTMUST00000069512.1 | 360 | 83aa | OTTMUSP00000035315 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | D6RHT2 | |
| Limch1-018 | OTTMUST00000138047.1 | 3356 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Limch1-011 | OTTMUST00000069541.2 | 735 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Limch1-009 | OTTMUST00000069516.1 | 624 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| Limch1-014 | OTTMUST00000138011.1 | 2538 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Limch1-002 | OTTMUST00000069457.2 | 2458 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Limch1-017 | OTTMUST00000138045.1 | 1018 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Limch1-015 | OTTMUST00000138012.2 | 786 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| Limch1-010 | OTTMUST00000069540.1 | 680 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
