Transcript: Toe1-006 OTTMUST00000022559.2

Description

target of EGR1, member 1 (nuclear)

Location

Chromosome 4: 116,804,782-116,806,523 reverse strand.

About this transcript

This transcript has 6 exons and is annotated with 5 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000009757 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Toe1-001	OTTMUST00000022554.1	2090	511aa	OTTMUSP00000010283	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS18517	Q9D2E2
Toe1-002	OTTMUST00000022555.1	1209	329aa	OTTMUSP00000010284	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Toe1-006	OTTMUST00000022559.2	1097	188aa	OTTMUSP00000037359	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	F6ZMT3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Toe1-003	OTTMUST00000022556.1	659	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Toe1-008	OTTMUST00000022561.1	433	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Toe1-004	OTTMUST00000022557.1	909	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Toe1-007	OTTMUST00000022560.1	856	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Toe1-005	OTTMUST00000022558.1	780	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 6 Transcript length: 1,097 bps Translation length: 188 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/03/2012 (Created on 30/03/2005)

Alternative symbols

RP23-109A3.3-006

Remarks

novel transcript

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 116,804,782-116,806,523 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000145468

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Toe1-006 OTTMUST00000022559.2

Summary

Transcript-based displays