Transcript: Rapgef1-007 OTTMUST00000028652.2

Description

Rap guanine nucleotide exchange factor (GEF) 1

Location

About this transcript

This transcript has 26 exons and is annotated with 20 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Rapgef1-001	OTTMUST00000028646.3	6402	1086aa	OTTMUSP00000012961	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS15854	Q91ZZ2
Rapgef1-007	OTTMUST00000028652.2	6241	1224aa	OTTMUSP00000012965	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS38091	Q3UHC1
Rapgef1-004	OTTMUST00000028649.3	6212	1218aa	OTTMUSP00000012964	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS38092	Q3UGX8
Rapgef1-002	OTTMUST00000028647.2	4223	643aa	OTTMUSP00000012962	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F6ZDE5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Rapgef1-003	OTTMUST00000028648.3	3908	686aa	OTTMUSP00000012963	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	E0CXV1
Rapgef1-005	OTTMUST00000028650.3	683	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Rapgef1-006	OTTMUST00000028651.3	571	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 26 Transcript length: 6,241 bps Translation length: 1,224 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS38091

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/03/2012 (Created on 01/06/2005)

Alternative symbols

RP23-304D11.1-007

Remarks

M5C1048M04Rik

M5C1049A14Rik

M5C1056C16Rik

NP_001034176

mRNA end not found

Other assemblies

This transcript maps to 29,619,720-29,740,353 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000095087

Curation Method

Manual annotation from Havana