Transcript: Scfd2-005 OTTMUST00000070823.2

Description

sec1 family domain containing 2

Location

Chromosome 5: 74,447,780-74,531,729 reverse strand.

About this transcript

This transcript has 6 exons and is annotated with 5 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000028569 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Scfd2-004	OTTMUST00000070822.3	3834	477aa	OTTMUSP00000036154	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS19345	Q3TR67
Scfd2-001	OTTMUST00000070805.3	3672	684aa	OTTMUSP00000036140	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS51519	Q8BTY8
Scfd2-002	OTTMUST00000070820.3	2279	644aa	OTTMUSP00000036152	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS71603	-
Scfd2-008	OTTMUST00000070826.2	436	51aa	OTTMUSP00000072803	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Scfd2-005	OTTMUST00000070823.2	2261	477aa	OTTMUSP00000036155	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	CCDS19345	Q3TR67
Scfd2-006	OTTMUST00000070824.1	2144	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Scfd2-003	OTTMUST00000138498.1	318	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Scfd2-007	OTTMUST00000070825.3	620	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Scfd2-009	OTTMUST00000070827.1	597	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 6 Transcript length: 2,261 bps Translation length: 477 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS19345

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 02/02/2015 (Created on 14/09/2007)

Alternative symbols

AC115823.2-005

Other assemblies

This transcript maps to 74,447,780-74,531,729 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000075848

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Scfd2-005 OTTMUST00000070823.2

Summary

Transcript-based displays