Transcript: Tcof1-004 OTTMUST00000103320.1

Description

Treacher Collins Franceschetti syndrome 1, homolog

Location

Chromosome 18: 60,818,030-60,848,918 reverse strand.

About this transcript

This transcript has 20 exons and is annotated with 34 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000039736 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Tcof1-005	OTTMUST00000103318.3	4595	1356aa	OTTMUSP00000057695	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS57125	H3BL37
Tcof1-001	OTTMUST00000103321.2	4529	1320aa	OTTMUSP00000057697	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS37836	O08784
Tcof1-004	OTTMUST00000103320.1	3229	1056aa	OTTMUSP00000057696	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Tcof1-007	OTTMUST00000103324.2	582	167aa	OTTMUSP00000057699	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Tcof1-002	OTTMUST00000103317.1	4410	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Tcof1-003	OTTMUST00000103322.1	4064	1013aa	OTTMUSP00000057698	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
Tcof1-008	OTTMUST00000103323.1	865	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 20 Transcript length: 3,229 bps Translation length: 1,056 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 10/07/2015 (Created on 20/05/2011)

Alternative symbols

RP23-385E10.1-004

Remarks

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 60,818,030-60,848,918 in GRCm38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000177172

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Tcof1-004 OTTMUST00000103320.1

Summary

Transcript-based displays