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Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
- Genomic alignments
- Orthologues
- Alt. alleles
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Gene expression
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Gene: HPCAL1 OTTHUMG00000090451

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Description

hippocalcin-like 1

Synonyms

BDR1, HLP2, VILIP-3

Location

Chromosome 2: 10,302,889-10,427,617 forward strand.

VEGA68:CM000664.2

About this gene

This gene has 5 transcripts (splice variants), 17 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
HPCAL1-002	OTTHUMT00000206898.1	1904	193aa	OTTHUMP00000115514	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS1671	Q6FGY1
HPCAL1-001	OTTHUMT00000206897.2	1751	193aa	OTTHUMP00000115513	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS1671	Q6FGY1
HPCAL1-005	OTTHUMT00000323536.2	587	103aa	OTTHUMP00000200385	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H7BZC1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
HPCAL1-004	OTTHUMT00000323535.3	586	30aa	OTTHUMP00000200384	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	C9JW46	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
HPCAL1-003	OTTHUMT00000323534.2	4781	175aa	OTTHUMP00000200383	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	E9PC71

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Summary

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Gene-based displays